Table 3

Representative downregulated genes (out of 446 total)

Probe ID
Fold change
Common
Genbank
Description

Down regulated genes
GE54030
0.09
EIF1AY
NM_004681
eukaryotic translation initiation factor 1A, Y-linked (EIF1AY), mRNA
GE79500
0.1
RPS4Y
NM_001008
ribosomal protein S4, Y-linked (RPS4Y), mRNA
GE54029
0.12
DDX3Y
NM_004660
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide, Y chromosome (DBY), mRNA
GE59227
0.12
JARID1D
NM_004653
Smcy homolog, Y-linked (mouse) (SMCY), mRNA
GE55836
0.15
MLAT4
NM_018192
myxoid liposarcoma associated protein 4 (MLAT4), mRNA
GE54974
0.19
TNFRSF19
NM_148957
tumor necrosis factor receptor superfamily, member 19 (TNFRSF19), transcript variant 2, mRNA
GE788416
0.28
KRTAP4-9
AJ406941
partial mRNA for keratin associated protein 49 (KRTAP4.9 gene)
GE489986
0.32
ZFY
NM_003411
zinc finger protein, Y-linked (ZFY), mRNA
GE58359
0.35
GCHFR
NM_005258
GTP cyclohydrolase I feedback regulatory protein (GCHFR), mRNA
GE87376
0.36
BAIAP2L1
NM_018842
insulin receptor tyrosine kinase substrate (LOC55971), mRNA
GE561268
0.39
FOXD4L2
NM_199135
FOXD4-like 2 (FOXD4L2), mRNA
GE54486
0.4
DAPK2
NM_014326
death-associated protein kinase 2 (DAPK2), mRNA
GE79999
0.4
CAMK1
NM_003656
calcium/calmodulin-dependent protein kinase I (CAMK1), mRNA
GE58178
0.4
KAL1
NM_000216
Kallmann syndrome (KAL) mRNA, complete cds
GE82446
0.4
BAIAP2L1
NM_018842
insulin receptor tyrosine kinase substrate (LOC55971), mRNA
GE58327
0.41
CD83
NM_004233
CD83 antigen (activated B lymphocytes, immunoglobulin superfamily) (CD83), mRNA
GE567535
0.42
NGFRAP1
AF187064
p75NTR-associated cell death executor (NADE) mRNA
GE62339
0.42
CSE-C
NM_018978
sialic acid-specific 9-O-acetylesterase I mRNA, complete cds
GE82815
0.42
FA2H
NM_024306
fatty acid 2-hydroxylase (FA2H), mRNA
GE82367
0.44
LAPTM4B
NM_018407
lysosomal associated protein transmembrane 4 beta (LAPTM4B), mRNA phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila)
GE81609
0.45
PDE4A
NM_006202
(PDE4A), mRNA
GE61123
0.45
ZNF239
NM_005674
zinc finger protein 239 (ZNF239), mRNA
GE53189
0.46
AUTS2
NM_015570
autism susceptibility candidate 2 (AUTS2), mRNA
GE81426
0.46
USP9Y
NM_004654
ubiquitin specific protease 9, Y chromosome (fat facets-like Drosophila) (USP9Y), mRNA
GE63274
0.48
CENTG3
AL537305
FETAL BRAIN cDNA clone CS0DF025YC08 5-PRIME
GE83170
0.48
BCL2L14
NM_030766
apoptosis regulator BCL-G (BCLG), transcript variant 2, mRNA
GE58554
0.49
PRO1914
NM_014106
PRO1914 protein (PRO1914), mRNA
GE86889
0.49
SLC26A7
NM_052832
solute carrier family 26, member 7 (SLC26A7), transcript variant 1, mRNA
GE81520
0.49
BCAT1
NM_005504
branched chain aminotransferase 1, cytosolic (BCAT1), mRNA

Fold change = diseased/normal

Avasarala et al. BMC Medical Genomics 2008 1:2   doi:10.1186/1755-8794-1-2