Table 1

Percent of genotypes correctly imputed in each scenario, considering alternative low-density genotyping strategiesa.

S1

S2


Training females – all genotypes imputed

69


Prediction – all genotypes imputed

64

68


Prediction – all genotypes imputed, except every 10 Mb

65

73


Prediction – all genotypes imputed, except every 5 Mb

65

75


Prediction – all genotypes imputed, except every 2 Mb

68

78


aThe number of SNPs genotyped was 55 for 10 Mb spacing, 105 for 5 Mb spacing and 251 for 2 Mb spacing.

Cleveland et al. BMC Proceedings 2011 5(Suppl 3):S6   doi:10.1186/1753-6561-5-S3-S6

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