Table 4

Accuracy of genomic breeding values using three methods, as the correlation between true and predicted breeding values, for animals in the prediction set using all markers (ALL) and using alternative low-density approaches, for t600.

Scenario

Bayes-A

Student-t

Lasso


ALL

0.916

0.945

0.916

EVEN_19

0.040

0.206

0.258

EVEN_38

0.732

0.738

0.738

EVEN_76

0.734

0.761

0.758

SIG_19

0.913

0.931

0.910

SIG_38

0.915

0.938

0.914

SIG_76

0.915

0.943

0.921

EVEN_GP_19

0.658

0.674

0.671

EVEN_GP_38

0.833

0.84

0.817

EVEN_GP_76

0.834

0.846

0.825

SIG_GP_19

0.914

0.937

0.914

SIG_GP_38

0.915

0.940

0.917

SIG_GP_76

0.916

0.943

0.920


Cleveland et al. BMC Proceedings 2010 4(Suppl 1):S6   doi:10.1186/1753-6561-4-S1-S6

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