Table 1

Number of SNPs included in the calculation of genomic breeding values in each low-density scenario

Scenario

Evenly-spaceda

Largest effectsb

Genotype

Total

probabilitiesc


EVEN_19

19

19

EVEN_38

38

38

EVEN_76

76

76

SIG_19

19

19

SIG_38

38

38

SIG_76

76

76

EVEN_GP_19

19

434

453

EVEN_GP_38

38

415

453

EVEN_GP_76

76

377

453

SIG_GP_19

19

434

453

SIG_GP_38

38

415

453

SIG_GP_76

76

377

453


aSelected by taking the mth SNPs from ordered list and thus SNP were approximately evenly-spaced

bSelected by taking the top m SNPs from a list ordered by absolute effect, for each analysis method

cGenotype probabilities were used in place of actual genotypes for all SNPs that don't fall into one of the other categories, within a scenario

Cleveland et al. BMC Proceedings 2010 4(Suppl 1):S6   doi:10.1186/1753-6561-4-S1-S6

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