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This article is part of the supplement: Proceedings of the 13th European workshop on QTL mapping and marker assisted selection

Open Access Proceedings

QTLMAS 2009: simulated dataset

Albart Coster1*, John W M Bastiaansen1, Mario P L Calus2, Chris Maliepaard3 and Marco C A M Bink4

Author Affiliations

1 Animal Breeding and Genomics Centre, Wageningen University, Wageningen, The Netherlands

2 Animal Breeding and Genomics Centre, Wageningen UR Livestock Research, Lelystad, The Netherlands

3 Plant Breeding, Wageningen University, Wageningen, The Netherlands

4 Biometris, Plant Research International, Wageningen, The Netherlands

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BMC Proceedings 2010, 4(Suppl 1):S3  doi:10.1186/1753-6561-4-S1-S3

Published: 31 March 2010

Abstract

Background

The simulation of the data for the QTLMAS 2009 Workshop is described. Objective was to simulate observations from a growth curve which was influenced by a number of QTL.

Results

The data consisted of markers, phenotypes and pedigree. Genotypes of 453 markers, distributed over 5 chromosomes of 1 Morgan each, were simulated for 2,025 individuals. From those, 25 individuals were parents of the other 2,000 individuals. The 25 parents were genetically related. Phenotypes were simulated according to a logistic growth curve and were made available for 1,000 of the 2,000 offspring individuals. The logistic growth curve was specified by three parameters. Each parameter was influenced by six Quantitative Trait Loci (QTL), positioned at the five chromosomes. For each parameter, one QTL had a large effect and five QTL had small effects. Variance of large QTL was five times the variance of small QTL. Simulated data was made available at http://www.qtlmas2009.wur.nl/UK/Dataset/. webcite