Table 2

Loci associated with latent variables: asymptote (ASYM), inflection point (XMID) and scaling factor (SCAL) using haplotypes consisting of 1 and 2 SNPs.

latent variable

SNPs/haplotype

Locus

pwBF

Prob(2ndMix)

FDR

ASYM

1SNP

all_0.4447

231.0

1.00

0.00

all_1.0359

231.0

1.00

0.00

all_1.0516

231.0

1.00

0.00

all_1.8834

103.7

0.98

0.01

all_3.7168

24.2

0.91

0.02

2 SNPs

all_0.4447+1

231.0

1.00

0.00

all_1.0243+1

231.0

1.00

0.00

all_1.8574+1

44.3

0.95

0.02

all_1.0516+

9.3

0.80

0.06

all_3.7168+1

1.3

0.36

0.18

XMID

1 SNP

all_0.4153

231.0

1.00

0.00

2 SNPs

all_0.4029+1

23.6

0.91

0.09

SCAL

1SNP

all_1.4852

231.0

1.00

0.00

all_0.9137

231.0

1.00

0.00

all_3.0827

71.5

0.97

0.01

all_3.0411

67.1

0.97

0.02

all_3.8701

48.4

0.95

0.02

all_2.3108

6.1

0.72

0.06

all_4.3212

3.3

0.59

0.11

all_3.9476

1.7

0.42

0.17

all_4.3915

1.2

0.33

0.23

2 SNPs

all_0.9137+1

231.0

1.00

0.00

all_2.3108+1

21.0

0.90

0.05

all_1.4829+1

18.9

0.89

0.07

all_3.8701 + 1

12.2

0.84

0.09

all_3.0480+1

3.8

0.62

0.15

all_0.4447+1

3.8

0.62

0.19

all_3.0813+1

2.9

0.55

0.23

all_4.2975+1

2.5

0.52

0.26

all_3.0128+1

1.5

0.39

0.30

all_3.8360+1

1.1

0.33

0.33

all_3.1467+1

1.0

0.31

0.37

all_ 2.4607+1

1.0

0.31

0.39


Heuven and Janss BMC Proceedings 2010 4(Suppl 1):S12   doi:10.1186/1753-6561-4-S1-S12

Open Data