Table 4

KGML subtypes and the corresponding SBML Qual sign attributes and SBO identifiers
KGML subtype SBML Qual sign SBO identifier SBO name
activation positive SBO:0000170 stimulation
inhibition negative SBO:0000169 Inhibition
expression positive SBO:0000170 stimulation
repression negative SBO:0000169 inhibition
indirect effect unknown SBO:0000344 molecular interaction
state change unknown SBO:0000168 control
binding/association unknown SBO:0000177 non-covalent binding
dissociation unknown SBO:0000177 non-covalent binding
missing interaction unknown SBO:0000396 uncertain process
phosphorylation unknown SBO:0000216 phosphorylation
dephosphorylation unknown SBO:0000330 dephosphorylation
glycosylation unknown SBO:0000217 glycosylation
ubiquitination unknown SBO:0000224 ubiquination
methylation unknown SBO:0000214 methylation

Büchel et al.

Büchel et al. BMC Systems Biology 2013 7:116   doi:10.1186/1752-0509-7-116

Open Data