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Path2Models: large-scale generation of computational models from biochemical pathway maps

Finja Büchel12, Nicolas Rodriguez13, Neil Swainston4, Clemens Wrzodek2, Tobias Czauderna5, Roland Keller2, Florian Mittag12, Michael Schubert1, Mihai Glont1, Martin Golebiewski6, Martijn van Iersel1, Sarah Keating1, Matthias Rall2, Michael Wybrow7, Henning Hermjakob1, Michael Hucka8, Douglas B Kell49, Wolfgang Müller6, Pedro Mendes10114, Andreas Zell2, Claudine Chaouiya12, Julio Saez-Rodriguez1, Falk Schreiber135, Camille Laibe1, Andreas Dräger142 and Nicolas Le Novère13*

Author Affiliations

1 European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

2 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen 72076, Germany

3 Babraham Institute, Babraham Research Campus, Cambridge, UK

4 Manchester Institute of Biotechnology, The University of Manchester, Manchester M1 7DN, UK

5 Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben D-06466, Germany

6 HITS gGmbH, D-69118, Heidelberg, Germany

7 Caulfield School of Information Technology, Monash University, Victoria 3800, Australia

8 Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA 91125, USA

9 School of Chemistry, The University of Manchester, Manchester M13 9PL, UK

10 School of Computer Science, The University of Manchester, Manchester M13 9PL, UK

11 Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA

12 Instituto Gulbenkian de Ciência (IGC), Oeiras P-2780-156, Portugal

13 Institute of Computer Science, University of Halle-Wittenberg, Halle, Germany

14 Present address: University of California, San Diego, Bioengineering Department, La Jolla, CA 92093-0412, USA

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BMC Systems Biology 2013, 7:116  doi:10.1186/1752-0509-7-116

Published: 1 November 2013

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Additional file 1:

Table S1 is provided as an additional file and through labarchives, DOI:10.6070/H4RR1W6P.

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Additional file 2:

Provided as an additional file and through labarchives, DOI:10.6070/H4WH2MX0.

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