Table 1

Protein and the complex annotation summary

Number of the proteins (a)


H-InvDB proteins

108,530

Proteins in the PPI data set

9,268

Proteins in the predicted complexes

4,513

Category I

2,106

Category II

299

Category III

3,273


Number of the complexes (b)


Perfectly matched

136

Partially matched

405

Hypothetical

723

Total

1,264


(a) Number of proteins in H-InvDB, the integrated PPI data set, and the predicted complexes. The categorized proteins in the predicted complexes are described in the text. Because complex sharing proteins could be classified into more than one category as subunits of different complexes, the total number of categorized proteins is greater than the number of nonredundant proteins in the predicted complexes. (b) Type of the predicted complexes. Three types of predicted complexes were defined by degree of matching to known complexes (details are in the text). Total number of the predicted complexes in this study is 1,264.

Kikugawa et al. BMC Systems Biology 2012 6(Suppl 2):S7   doi:10.1186/1752-0509-6-S2-S7

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