Table 6

Examples of inconsistent referrals to pathway names in M. musculus.

IntPath

KEGG

WikiPathways

MouseCyc


Fatty Acid

Fatty acid

Fatty Acid

1. fatty acid biosynthesis initiation II

Biosynthesis

biosynthesis

Biosynthesis

2. very long chain fatty acid biosynthesis

3. fatty acid biosynthesis initiation III

Cholesterol

Cholesterol

1. cholesterol biosynthesis III (via desmosterol)

Biosynthesis

Biosynthesis

2. cholesterol biosynthesis II (via 24,25-dihydrolanosterol)

3. cholesterol biosynthesis I

4. superpathway of cholesterol biosynthesis

TCA cycle

Citrate cycle (TCA cycle)

TCA cycle

TCA Cycle

Glycolysis and Gluconeogenesis

Glycolysis/Gluconeogenesis

Glycolysis and Gluconeogenesis

1. glycolysis I 2. glycolysis II


The table shows several examples of the same pathways with inconsistent referrals to pathway names in different databases.

Zhou et al. BMC Systems Biology 2012 6(Suppl 2):S2   doi:10.1186/1752-0509-6-S2-S2

Open Data