Table 5

Table showing data overlap for same chosen pathways in difference source databases.

M. musculus

TCA cycle pathway

KEGG vs WikiPathways

KEGG vs MouseCyc

MouseCyc vs WikiPathways


Gene

Count

31 vs 30

31 vs 13

13 vs 30

Overlap

24

13

11

Jaccard Coefficient

0.65

0.42

0.34

Gene Pair

Count

100 vs 30

100 vs 24

24 vs 30

Overlap

10

9

7

Jaccard Coefficient

0.083

0.078

0.149


H.sapiens

Fatty Acid Biosynthesis

KEGG vs WikiPathways

KEGG vs HumanCyc

HumanCyc vs WikiPathways


Gene

Count

6 vs 22

6 vs 2

2 vs 22

Overlap

3

2

1

Jaccard Coefficient

0.12

0.33

0.04

Gene Pair

Count

12 vs 29

12 vs 2

2 vs 29

Overlap

1

1

0

Jaccard Coefficient

0.025

0.077

0.0


M. tuberculosisH37Rv

TCA cycle pathway

KEGG vs WikiPathways

KEGG vs MTBRvCyc

MTBRvCyc vs WikiPathways


Gene

Count

35 vs 34

35 vs 10

10 vs 34

Overlap

34

10

10

Jaccard Coefficient

0.97

0.29

0.29

Gene Pair

Count

107 vs 37

107 vs 19

19 vs 37

Overlap

3

9

5

Jaccard Coefficient

0.021

0.077

0.098


This table shows the calculation of gene/gene pair differences and overlap between the different source databases for the same chosen pathways.

Zhou et al. BMC Systems Biology 2012 6(Suppl 2):S2   doi:10.1186/1752-0509-6-S2-S2

Open Data