Table 3

Summary of overlapping gene proportions.

H. sapiens

KEGG vs WikiPathways

WikiPathways vs HumanCyc

HumanCyc vs KEGG


Overlap Genes

2,485

396

824

Unique Genes

4,410

3,735

5,369

Jaccard Coefficient

0.360

0.096

0.133


M.musculus

KEGG vs WikiPathways

WikiPathways vs MouseCyc

MouseCyc vs KEGG


Overlap Genes

2,611

532

919

Unique Genes

5,168

4,214

5,662

Jaccard Coefficient

0.336

0.112

0.140


S. cerevisiae

KEGG vs WikiPathways

WikiPathways vs YeastCyc

YeastCyc vs KEGG


Overlap Genes

801

402

480

Unique Genes

996

601

1,317

Jaccard Coefficient

0.446

0.400

0.267


M.tuberculosisH37Rv

KEGG vs WikiPathways

WikiPathways vs MTBRvCyc

MTBRvCyc vs KEGG


Overlap Genes

141

60

432

Unique Genes

948

525

707

Jaccard Coefficient

0.129

0.103

0.379


Summary of the number of overlap genes, number of unique genes, and Jaccard coefficient among three representative databases.

Zhou et al. BMC Systems Biology 2012 6(Suppl 2):S2   doi:10.1186/1752-0509-6-S2-S2

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