Additional file 2.

Prediction validations. In this file, plots of positive predictive value (PPV), true positive rate (TPR) and Specificity are given for all TFs where sufficient experimental data have been made available by the ENCODE project. Validation has been made in each case for all prediction profiles from the 1% top-ranking sites down to 100% of the predictions for conserved binding sites.

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Haubrock et al. BMC Systems Biology 2012 6(Suppl 2):S15   doi:10.1186/1752-0509-6-S2-S15