Table 2 |
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|
Frequencies of the 3' end modified fragments in libraries. |
|||||||
|
Library |
A |
U |
AA |
AU |
UU |
SUM |
miRNA reads with 3' end modi. |
|
|
|||||||
|
SRX018957 |
64.74% |
11.86% |
6.46% |
4.61% |
4.58% |
92.25% |
29.78% |
|
SRX018958 |
67.17% |
11.95% |
4.98% |
2.77% |
3.90% |
90.77% |
30.68% |
|
SRX018959 |
73.16% |
9.40% |
4.90% |
2.72% |
2.47% |
92.65% |
28.55% |
|
SRX018960 |
72.54% |
11.39% |
5.06% |
2.29% |
2.56% |
93.84% |
30.11% |
|
SRX018961 |
60.76% |
19.78% |
5.57% |
2.83% |
2.04% |
90.98% |
15.02% |
|
SRX018962 |
66.21% |
13.10% |
5.31% |
3.89% |
2.72% |
91.23% |
19.90% |
|
SRX018963 |
64.39% |
14.56% |
5.52% |
3.82% |
3.34% |
91.63% |
20.31% |
|
SRX018964 |
60.02% |
16.08% |
5.96% |
4.81% |
4.37% |
91.24% |
20.55% |
|
SRX018965 |
62.39% |
11.89% |
4.22% |
3.66% |
1.61% |
83.77% |
12.91% |
|
SRX018966 |
68.71% |
10.60% |
5.92% |
1.17% |
2.94% |
89.34% |
27.19% |
|
SRX018967 |
73.14% |
8.56% |
6.30% |
2.70% |
1.77% |
92.47% |
31.05% |
|
SRX018968 |
69.95% |
8.60% |
7.66% |
3.17% |
1.66% |
91.04% |
21.93% |
|
SRX018969 |
63.61% |
14.26% |
5.01% |
2.59% |
4.18% |
89.65% |
18.28% |
|
SRX018970 |
67.59% |
9.56% |
4.80% |
3.99% |
4.82% |
90.76% |
35.91% |
|
SRX018971 |
50.00% |
14.03% |
11.32% |
4.48% |
2.42% |
82.25% |
16.81% |
|
|
|||||||
|
Using an alternative mapping criterion, we collected the sequences of the 3' end modified
fragments by analyzing their relative abundances in all modification events. A and
U account for almost 80% of all modification events. Only the modified fragments accounting
for |
|||||||
|
Li et al. BMC Systems Biology 2012 6(Suppl 2):S14 doi:10.1186/1752-0509-6-S2-S14 |
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