Table 2

Parameters for clustering algorithms

Clustering algorithm

Parameter settings


CMC

min deg ratio = 1, min size = 4, overlap thres = 0.5, merge thres = 0.25

min deg ratio = 1, min size = 4, overlap thres = 0.5, merge thres = 0.5

min deg ratio = 1, min size = 4, overlap thres = 0.5, merge thres = 0.75

HACO

-c c 1 -g 0.1

-c c 1 -g 0.3

c c 0.75 -g 0.1

MCL

-I 2

-I 3

-I 4

ClusterONE

-s 4 -d 0

IPCA

-S4 -P2 -T0.4

RNSC

-e10 -D50 -d10 -t20 -T3


Yong et al. BMC Systems Biology 2012 6(Suppl 2):S13   doi:10.1186/1752-0509-6-S2-S13

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