Table 3 

Transition probabilities for single mutations C1C4 

G^{+} 
G^{} 
P^{+}T^{+} 
P^{}T^{} 
P^{+}T^{} 
P^{}T^{+} 



C1 



G^{+} 
0.251 
0 
0.008 
0 
0 
0 
G^{} 
0 
0.329 
0 
0 
0.003 
0 
P^{+}T^{+} 
0.015 
0 
0.180 
0.013 
0 
0 
P^{}T^{} 
0 
0 
0.015 
0.157 
0 
0 
P^{+}T^{} 
0 
0.0049 
0 
0 
0.031 
0 
P^{}T^{+} 
0 
0 
0 
0 
0 
0 


C2 



G^{+} 
0 
0 
0.007 
0 
0 
0 
G^{} 
0 
0.82 
0 
0 
0.007 
0 
P^{+}T^{+} 
0.008 
0 
0.022 
0.001 
0 
0 
P^{}T^{} 
0 
0 
0.043 
0.039 
0 
0 
P^{+}T^{} 
0 
0.007 
0 
0 
0.039 
0 
P^{}T^{+} 
0 
0 
0 
0 
0 
0 


C3 



G^{+} 
0.317 
0 
0.008 
0 
0 
0 
G^{} 
0 
0.242 
0 
0 
0.026 
0 
P^{+}T^{+} 
0.023 
0 
0.030 
0 
0 
0 
P^{}T^{} 
0 
0 
0 
0 
0 
0 
P^{+}T^{} 
0 
0.043 
0 
0 
0.174 
0.046 
P^{}T^{+} 
0 
0 
0 
0 
0.046 
0.151 


C4 



G^{+} 
0.815 
0 
0.019 
0 
0 
0 
G^{} 
0 
0 
0 
0 
0.019 
0 
P^{+}T^{+} 
0 
0 
0.037 
0 
0 
0 
P^{}T^{} 
0 
0 
0 
0 
0 
0 
P^{+}T^{} 
0 
0.037 
0 
0 
0.037 
0 
P^{}T^{+} 
0 
0 
0 
0 
0 
0.037 


Table 3,4,5 and 6 list the transition probabilities between functions for every motif and its respective function probability distribution. The values are obtained from numerical simulation. 

Widder et al. BMC Systems Biology 2012 6:7 doi:10.1186/1752050967 