Table 4

Q-values of pathways detected by GSA for the three breast cancer datasets
Dataset 1 Dataset 2 Dataset 3
PTC1 0.0077 0.0072 0.013
Cell cycle <0.0001 0.00027 0.0072
SRCRPTP 0.0020 0.0027 0.0043
G2 &M phase 0.0048 0.0025 0.0075
Cyclin 0.019 0.0072 0.0050
RB 0.0048 0.0030 0.0072
G2 0.0020 0.00027 0.011
SKP2E2F 0.0069 0.012 0.0070
CDC25 0.0022 0.00027 0.0075

q-value < 0.01 is considered as significant.

Only pathways detected by at least two datasets are listed.

Dataset 1: GSE7390; Dataset 2: GSE19615; Dataset 3: GSE26639.

Liu et al.

Liu et al. BMC Systems Biology 2012 6:65   doi:10.1186/1752-0509-6-65

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