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Open Access Research article

Stochastic simulations of a synthetic bacteria-yeast ecosystem

Konstantinos Biliouris1, David Babson2, Claudia Schmidt-Dannert3 and Yiannis N Kaznessis1*

Author Affiliations

1 Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave SE, Minneapolis, MN 55455, USA

2 University of Minnesota Biotechnology Institute, 140 Gortner Lab, 1479 Gortner Avenue, Saint Paul, MN 55108, USA

3 Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 140 Gortner Laboratory, Saint Paul, MN 55108, USA

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BMC Systems Biology 2012, 6:58  doi:10.1186/1752-0509-6-58

Published: 6 June 2012

Additional files

Additional file 1:

Stochastic differential equations used to simulate the behavior of the synthetic ecosystem. This file contains the equations and the species used to stochastically simulate the behavior of the synthetic ecosystem. It also includes 100 trajectories of the evolution of all the species when S. cerevisiae and E. coli coexist (In support of Figure 2).

Format: PDF Size: 276KB Download file

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Open Data