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Open Access Highly Accessed Research article

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

Benjamin D Heavner1, Kieran Smallbone2, Brandon Barker3, Pedro Mendes4 and Larry P Walker1*

Author Affiliations

1 Department of Biological & Environmental Engineering, Cornell University, Ithaca, NY, 14853, USA

2 Manchester Centre for Integrative Systems Biology, University of Manchester, Manchester, M1 7DN, UK

3 Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY, 14853, USA

4 School of Computer Science, University of Manchester, Manchester, M13 9PL, UK

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BMC Systems Biology 2012, 6:55  doi:10.1186/1752-0509-6-55

Published: 4 June 2012

Additional files

Additional file 1:

Function testYeastModel.m.m.

Format: M Size: 75KB Download file

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Additional file 2:

Function modelToReconstruction.m.

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Additional file 3:

Function fluxDistribution.m.

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Additional file 4:

Yeast metabolic network reconstruction.

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Additional file 5:

Yeast metabolic network model.

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Additional file 6:

Table S1. ORFs in Yeast 4 not in Yeast 5.

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Additional file 7:

Table S2. ORFs in Yeast 5 not in Yeast 4.

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Additional file 8:

Table S3.Genes considered essential.

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Additional file 11:

Table S6. Biomass Definition.

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Additional file 9:

Table S4. Auxotroph-inducing genes.

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Additional file 10:

Table S5. Gene interaction analysis.

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