Table 1

Characteristics of the reconstructed metabolic models iLC915 and iSS884 of Pichia pastoris and stipitis, in comparison with the S. cerevisiae model iIN800 and iMM904

Characteristics

P. stipitis

P. pastoris

S. cerevisiae


iSS884

iLC915

PpaMBEL1254

iPP668

iMM904

iIN800


Reactions

1332

1423

1202

1354

1312

1446

Cytoplasm

824

790

604

623

635

906

Mitochondria

207

205

155

163

180

161

Peroxisome

60

64

66

66

63

Vacuole

12

6

3

3

ER

34

7

15

17

Golgi

4

8

4

2

Nucleus

17

16

18

Extracellular

11

12

7

Transport

239

314

328

452

387

379

Metabolites

920

899

1147

1177

1168

1013

Gene coverage (%)

15.1

17.2

9.9

12.6

13.7

12.11

Coding genes

5841

5313

5313

5313

6607

6607


Characteristics of the previous GEMs of P. pastoris are also included to compare with iLC915

Caspeta et al. BMC Systems Biology 2012 6:24   doi:10.1186/1752-0509-6-24

Open Data