Table 3

GraphAlignment and Græmlin performance on empirical bio-molecular networks
Comparison Escherichia coli vs. Salmonella enterica Escherichia coli vs. Bacillus subtilis
Algorithm GraphAlignment Græmlin Blast BBH GraphAlignment Græmlin Blast BBH
NA 624 687 662 585 459 401
NC 539 492 (562) 557 259 237 (296) 274
NO 543 543 543 284 284 284
NC / NA [%] 86.4 71.6 (81.8) 84.1 44.3 51.6 (64.5) 68.3
NC / NO [%] 99.3 90.6 (104) 103 91.2 83.5 (104) 96.5
Edge / vertex score 1453 / 4789 - - 1979 / 2550 - -

Gene co-expression networks. See Table 2 for details.

Kolář et al.

Kolář et al. BMC Systems Biology 2012 6:144   doi:10.1186/1752-0509-6-144

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