Additional file 1.

The Additional file 1 contains the codes used to generate the network instances and to find the optimal alignment byGraphAlignmentandGræmlin 2.0, Figures S1 and S2. Further, it contains Figure S3 with the matrix of vertex similarities Θ(i,i)and the matrix of correlations between the edge weights of vertices i in G and i in G for the scenarios (i) and (ii). Figures S4 and S5 give the computational complexity and accuracy of the GraphAlignment and Gæmlin algorithms in scenario (ia) with the edge weights drawn from the normal distribution. Finally, Table S1 compares the GraphAlignment and Græmlin performance on empirical gene co-expression networks.

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Kolář et al. BMC Systems Biology 2012 6:144   doi:10.1186/1752-0509-6-144