Additional file 2.

Table S1.Provides the numbers and the detailed gene lists of our refined (i.e., biologically interpretable) and the original TF knockout targets identified by Reimand et al. for the 112 TFs under study. Moreover, the identified path for each biologically interpretable TF knockout target can also be found in this table. The identified paths form experimentally testable hypotheses regarding the molecular mechanisms of how a TF may regulate its knockout targets.

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Yang and Wu BMC Systems Biology 2012 6:102   doi:10.1186/1752-0509-6-102