Table 3

Number of transcription factors with gene sets containing their known binding sites enriched by the different methods in comparison
Method Data used # TFs with enriched gene setsa
iBMA-prior Gene expression + external data 38
iBMA-shortlist Gene expression + external data 30
LASSO-shortlist Gene expression + external data 41
LAR-shortlist Gene expression + external data 44
iBMA-size Gene expression data only 4
iBMA-noprior Gene expression data only 9
LASSO-noprior Gene expression data only 13
LAR-noprior Gene expression data only 10

a FDR was controlled at 10%.

Lo et al.

Lo et al. BMC Systems Biology 2012 6:101   doi:10.1186/1752-0509-6-101

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