Table 1

Twenty-one differentially expressed starch genes (Q < 0.01) under the diurnal condition
AGI Name Description Cluster Group
At1g32900 GBSS Granule-bound starch synthase 19 A
At1g76130 a-AMY2 α-amylase, putative 8 A
At3g01180 SS2 Starch synthase 2 8 A
At5g18670 b-AMY9 β-amylase, putative (BMY3) 19 A
At1g03310 ISA2/DBE1 Isoamylase, putative 2 B
At1g10760 GWD1 Glucan water dikinase 10 B
At1g69830 a-AMY3 α-amylase, putative 6 B
At2g36390 SBE2-1/BE3 1,4-α-glucan branching enzyme 22 B
At2g40840 DPE2 Glycoside hydrolase family 77 protein 23 B
At3g29320 StP, Plast Glucan phosphorylase, putative 6 B
At3g46970 Stp, Cyt Starch phosphorylase, putative 6 B
At4g09020 ISO3 Isoamylase, putative 6 B
At4g18240 SS4 Starch synthase 4 22 B
At5g11720 AGLU like-4 α-glucosidase1(AGLU1) 20 B
At5g24300 SS1 Starch synthase 1 2 B
At5g26570 GWD/ PWD Glycoside hydrolase starch-binding domain-containing protein 10 B
At5g51820 PGM Phosphoglucomutase 22 B
At5g64860 DPE1 disproportionating enzyme, putative 10 B
At2g32290 b-AMY6 β-amylase, putative 13 C
At2g39930 ISA1 Isoamylase, putative 16 C
At4g17090 b-AMY3 β-amylase (CT-BMY) 24 C

Cluster indicates the cluster number analyzed by k-means clustering (k = 30). All clusters were subjectively divided into 4 groups—A, B, C, and D—according to the expression pattern in each cluster (Figure 1).

Ingkasuwan et al.

Ingkasuwan et al. BMC Systems Biology 2012 6:100   doi:10.1186/1752-0509-6-100

Open Data