Table 2

Four patterns of predicted MafB motifs

MafB binding sequence

MafB motif


tgtcta

    tgctcag

Width

Motif

Ambiguous motif

cttttg

    tgctgtt

N=8

CTGCTGAC

[CTG]TGCT[GC]AC

ccaaac

    tgctgac

N=9

TCTGCTGAC

[TAG][CTG]TGCT[GC]AC

cgtaac

    tgctgac

N=10

ATCTGCTGAC

[AT][TAG][CTG]TGCT[GC]AC

caaatt

    tgcagac

N=11

TATCTGCTGAC

[TA][AT][TAG][CTG]TGCT[GC]AC

taaagt

    tgctgaa

(N=Nucleotide)

catttc

    tgctgac

aggatg

    tgatgac

tgttgt

    tgctcac

(

    Underline
; MARE)


MafB motifs were extracted from 9 short MafB binding sequences containing 5’ AT-rich half-MARE(MARE) and validated by biochemical experimentations.

Morita et al. BMC Systems Biology 2011 5(Suppl 2):S7   doi:10.1186/1752-0509-5-S2-S7

Open Data