Table 3

Top LS scores from the microbial community data

X

Y

LS

Xs

Ys

Len

D

P

PCC

Ppcc

Q

Qpcc


Euk239

Euk269

0.82

1

1

40

0

0

0.09

0.59

0.02

1.00

Bac609

Bac675

0.77

1

2

39

-1

0

0.14

0.41

0.00

1.00

Euk381

Euk462

0.77

1

1

40

0

0

0.44

0.00

0.02

0.11

Euk583

Bac989

0.68

2

1

39

1

0

0.30

0.06

0.02

0.73

Euk229

Euk339

0.57

1

2

39

-1

0

0.05

0.77

0.02

1.00

Euk97

boxy

-0.62

15

15

21

0

0

-0.42

0.01

0.00

0.17

Euk98

boxy

-0.62

15

15

21

0

0

-0.42

0.01

0.00

0.17

Euk109

boxy

-0.62

15

15

21

0

0

-0.42

0.01

0.00

0.17

Euk112

boxy

-0.62

15

15

21

0

0

-0.42

0.01

0.00

0.17

Euk116

boxy

-0.62

15

15

21

0

0

-0.42

0.01

0.00

0.17


The 5 positive and 5 negative highest absolute LS Scores from associations uniquely found by eLSA in the microbial community dataset. The columns in succession are X (first factor), Y (second factor), LS (Local Similarity score), Xs (start of the best alignment in the first sequence), Ys (start of the best alignment in the second sequence), Len (alignment length), D (shift of the second sequence compared to the first sequence, -: X is ahead of Y, + otherwise), P (p-value for the LS score, 0.00 stands for P<0.005), PCC (Pearson’s Correlation Coefficient), Ppcc (P-value for PCC), Q (q-value calculated for P, 0.00 stands for Q<0.005), Qpcc (q-value for Ppcc).

Xia et al. BMC Systems Biology 2011 5(Suppl 2):S15   doi:10.1186/1752-0509-5-S2-S15

Open Data