Table 4

Regulatory links confirmed for A. thaliana using gene expression data

TFsf-TGblbs

TFf-TGblbs

TFsf-TGbs

TFsf-TGpr

TFf-TGpr

TFf-TGgalf


Number of mapped TFs

118

434

118

118

434

434

Number of mapped TGs

2252

2252

35181

25259

25259

25388

Number of links mapped

43423

480524

536154

274400

3182551

242030

Number of links analyzed

3056

8621

6085

34529

236585

25227

2090

2628

2995

2343

93287

3727

2109

2375

2968

2323

101224

2012

58

344

30

26

12737

1715

103

215

100

66

19037

503

786

5687

2987

2050

87983

150


Comparison of the six result sets of predicted regulatory links mapped from the S. cerevisiae genome to the A. thaliana genome. For every result set, the number of confirmed regulatory links is compared with the number of contradicted and neutral regulatory links to analyze the results. TFsf-TGblbs is the preferred set for regulatory links mapping.

Sharma et al. BMC Systems Biology 2011 5(Suppl 1):S4   doi:10.1186/1752-0509-5-S1-S4

Open Data