Table 3

TP, FP, FN and TN values for the mapped TGs in the target genome

TGbl

TGbs

TGblbs

TGpr

TGgalf


Number of mapped TGs

2252

35181

2252

25259

25388

True Positives (TP)

1717

25180

1717

24973

25077

False Positives (FP)

535

10001

535

286

311

True Negatives (TN)

9625

159

9625

49

24

False Negatives (F)

23474

11

23474

218

114


Comparison of the five result sets of predicted target genes (TGs) determined for the A. thaliana genome based on binary classifier. TGpr and TGgalf are analyzed as the preferred sets for target gene mapping. E-value threshold used for BLAST is 1e-1

Sharma et al. BMC Systems Biology 2011 5(Suppl 1):S4   doi:10.1186/1752-0509-5-S1-S4

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