Table 1 

Results of leaveoneout crossvalidation experiments on the small network. 

Random Control (%) 
Linkage Interval (%) 
Genomewide Scan(%) 



R^{2} 
BF 
R^{2} 
BF 
R^{2} 
BF 



Precision 
SG 
26.11 (0.66) 
26.56 (0.85) 
21.69 
23.79 
6.29 
5.25 
DK 
26.25 (0.63) 
28.67 (0.72) 
19.60 
31.20 
7.13 
5.53 

Mean Rank Ratio 
SG 
17.31 (0.11) 
11.99 (0.05) 
18.24 
11.19 
16.49 
11.17 
DK 
17.82 (0.13) 
10.75 (0.09) 
19.09 
9.73 
17.03 
9.91 

AUC 
SG 
83.51 (0.10) 
88.80 (0.05) 
82.81 
89.94 
83.60 
88.85 
DK 
83.01 (0.12) 
90.04 (0.11) 
81.95 
90.18 
83.06 
90.11 



The small network indicates the domaindomain interaction network that is composed of the PDB part of the DOMINE database. R^{2 }denotes the ordinary nonBayesian linear regression approach (using Rsquare as scores for candidate domains). BF denotes the domainRBF approach (using Bayes factors as scores for candidate domains). SG denotes shortest path with Gaussian kernel. DK denotes diffusion kernel. Results for random controls are mean (standard deviation) of 10 validation runs. 

Zhang et al. BMC Systems Biology 2011 5:55 doi:10.1186/17520509555 