Additional file 1.

Algorithms developed and used in this study. This file contains the algorithms developed and used in this study, including the depth-first-search algorithm for enumerating all simple paths from the input node(s) to the output node(s) of a signaling network, the iterative integer linear programming algorithm for enumerating elementary signaling modes, the depth-first-search algorithm for estimating the number of elementary signaling modes, as well as the dynamic programming algorithm for finding shortest elementary signaling modes.

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Wang and Albert BMC Systems Biology 2011 5:44   doi:10.1186/1752-0509-5-44