A new computational method to split large biochemical networks into coherent subnets
Centre for Advanced Computational Solutions, Dept WF & Molecular Bioscience, Lincoln University, Ellesmere Junction Road, Christchurch, New Zealand
BMC Systems Biology 2011, 5:25 doi:10.1186/1752-0509-5-25Published: 7 February 2011
Additional file 1:
Demonstration model. Specification of the network model used for demonstration in the Methods section, as an SBML file.
Format: SBML Size: 62KB Download file
Additional file 2:
Heuristic for block recognition. A description of the heuristic employed by Netsplitter for automated recognition of non-overlapping matrix blocks as defined in the text.
Format: DOC Size: 26KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional file 3:
Genome scale Arabidopsis model. Specification of the network model extracted from Aracyc 4.5 and used for demonstration in the Methods section, as an SBML file.
Format: SBML Size: 814KB Download file
Additional file 4:
External Metabolites. Listing of default external metabolites, specified as Biocyc compound ID's.
Format: TXT Size: 2KB Download file