Table 5

Carbon source utilization with respiration as FBA objective function.

E. coli K-12

E. coli O157:H7 (EHEC)a

E. coli (UPEC)b

S. typhimurium


Strain

MG1655

W3110

EDL933

Sakai

CFT073

UTI89

LT2


Condition

O2

No O2

O2

No O2

O2

No O2

O2

No O2

O2

No O2

O2

No O2

O2

No O2


Tested compounds included in models

76

76

76

76

76

76

76

76

76

76

76

76

54

54


True positivec

71

67

74

74

73

72

74

72

71

75

73

70

39

51


True negatived

5

9

2

2

3

4

2

4

5

1

3

6

15

3


False positivee

4

1

1

0

2

2

2

1

3

0

1

0

2

0


False negativef

3

2

2

3

5

5

5

5

6

8

3

3

0

0


aEnterohemorrhagic E. coli (EHEC)

bUropathogenic E. coli (UPEC)

cExperimental = Y

dExperimental = N

eExperimental = N and in silico = Y

fExperimental = Y and in silico = N

Baumler et al. BMC Systems Biology 2011 5:182   doi:10.1186/1752-0509-5-182

Open Data