Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052
1 Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL, USA
2 Institute for Genomic Biology, University of Illinois, Urbana, IL, USA
3 Department of Bioengineering, University of Illinois, Urbana, IL, USA
4 Center for Advanced BioEnergy Research, University of Illinois, Urbana, IL, USA
5 Department of Biological Systems Engineering, Virginia Tech, Blacksburg, VA, USA
6 Department of Food Science and Human Nutrition, University of Illinois, Urbana, IL, USA
7 Department of Chemical Engineering and Material Science, University of Minnesota, MN, USA
8 Institute for Systems Biology, 401 Terry Avenue N, Seattle, WA 98109, USA
BMC Systems Biology 2011, 5:130 doi:10.1186/1752-0509-5-130Published: 16 August 2011
Additional file 1:
Model Details. This Excel file contains detailed information about the following aspects of the iCM925 model: • reaction information (reactionData). • metabolite information (metaboliteData). • reaction additions from BiGG based on GapFill suggestions and BLAST scores (GapFill additions from BiGG). • biomass equation and details about its construction (Biomass Composition). • fatty acid and phospholipid molecular formulas (Phospholipid Formulas).
Format: XLS Size: 584KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 2:
Additional Figures and Analyses. This PDF contains information about the following supporting results, figures, analyses: A. Annotation Database Gene-Protein-Reaction (GPR) Agreement. B. Annotation Database Pathway Contribution. C. Experimental Data. D. Substrate Uptake Rates & Product Formation Rates. F. Flux Variability Analysis.
Format: PDF Size: 1.2MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
Model SBML File. This file contains the model in the Systems Biology Markup Language format. This file can be read into MATLAB using the COBRA Toolbox.
Format: XML Size: 1.2MB Download file