Additional file 5.

List of all the protein complexes with MIPS functions assigned by our method (Table S1). List of all the protein complexes with MIPS functions assigned by our method, where the core and attachment components are taken from Ref. [16] (and the indices are the same as Ref. [16]). We classify each function into the following three categories. (1) Gavin_1st (light yellow): minimizing the number of complexes for each newly assigned function, described as Eq. (4) in the main text. (2) Gavin_2nd (light green): minimizing the number of proteins for each newly assigned function, instead of that of complexes (3) The functions assigned by both (1) and (2) (bright yellow). Note that we only select high confidence (HC) outcomes among the raw outcomes, whose reliability of function assignment considering the multiple solutions is large.

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Lee et al. BMC Systems Biology 2011 5:126   doi:10.1186/1752-0509-5-126