Table 3

Overview of iRsp1095

Categories

No. in the reconstruction


Genes

1095

ORFs

1049

96.0%

tRNA genes

46

4.0%


Metabolites

1096

Unique metabolites

796

Cytoplasmic

795

Periplasmic

151

Extracellular

150


Reactions

1158

Enzymatic Reactions

858

74.1%

Transport reactions

300

25.9%

Reactions Associated with genes

1049

90.6%

Reactions based on experimental evidence

203

17.5%

Reactions inferred based on gene homology

846

73.1%

Spontaneous/Diffusion reactions

14

1.2%

Reactions without gene association

95

8.2%

Reactions associated with multi-protein complexes

130

11.2%

Reactions associated with isozymes

262

22.6%

Reversible Reactions

757

65.4%

Irreversible Reactions

401

34.6%

Exchange Reactions

148

Demand Reactions

3


Imam et al. BMC Systems Biology 2011 5:116   doi:10.1186/1752-0509-5-116

Open Data