Table 1

Features of the in silico metabolic model of R.eutropha H16

Features

Number


Genome feature

Genome size (base pairs, bp)

7,416,678

Chromosome 1

4,052,032

Chromosome 2

2,912,490

Megaplasmid pHG1

452,156

No. of open reading frames (ORFs)

6,626 (1,678)a

Chromosome 1

3,651 (841)

Chromosome 2

2,555 (680)

Megaplasmid pHG1

420 (157)

In silico metabolic model

No. of reactions (redundant) included in the model

1391

No. of biochemical reactions

1162

No. of transport reactions

229

No. of reactions (unique) included in the modelb

1367

No. of metabolites

1171

No. of ORFs assigned in metabolic network

1256

ORF coveragec (%)

18.96


a The parenthesis contains the number of the ORFs with unknown function.

bThe same redundant reactions catalyzed by an isozyme is counted as one.

cThe number of ORFs incorporated in the genome-scale model divided by the total number of ORFs in the genome of R. eutropha.

Park et al. BMC Systems Biology 2011 5:101   doi:10.1186/1752-0509-5-101

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