Table 2

Selected intracellular metabolite concentrations used in the model

Metabolite

Concentration (mM)


3-Phospho-D-glyceroyl phosphate

2.75 × 10-4

D-Glycerate 2-phosphate

0.0371

3-Phospho-D-glycerate

0.278

Acetaldehyde

0.17

ADP

1.63

AMP

0.796

ATP

1.13

CO2

1

Dihydroxyacetone phosphate

0.59

Ethanol

50

D-Fructose 2,6-bisphosphate

0.02

D-Fructose 6-phosphate

0.112

D-Fructose 1,6-bisphosphate

2.82

Glyceraldehyde 3-phosphate

0.069

D-Glucose 6-phosphate

1.02

D-Glucose

0.0906

Glycerol

2.27

Glycerol 3-phosphate

0.457

Nicotinamide adenine dinucleotide

1.5

Nicotinamide adenine dinucleotide - reduced

0.0861

Phosphoenolpyruvate

0.0302

Pyruvate

8.36


The data are taken from those models in the BioModels database specific to yeast.

Smallbone et al. BMC Systems Biology 2010 4:6   doi:10.1186/1752-0509-4-6

Open Data