Table 2

FFLs among TFBSs, SZmiRNAs and schizophrenia genes (SZGenes)

No.

SZGene

miRNA

TFBS matrix

Matrix consensus

TF symbol


1

ARVCF

hsa-miR-29b-2

V$TCF11MAFG_01

ATGACTCAGCANTTNNG

NFE2L1, MAFG

2

ARVCF

hsa-miR-29c

V$TCF11MAFG_01

ATGACTCAGCANTTNNG

NFE2L1, MAFG

3

BDNF

hsa-miR-195

V$NFKB_C

GGGACTTTCCA

NFKB1, NFKB2

4

DRD2

hsa-miR-9-3

V$RP58_01

AACATCTGGA

ZNF238

5

EGR3

hsa-miR-181b-1

V$IK3_01

TNYTGGGAATACC

IKZF1

6

EGR3

hsa-miR-20b

V$NGFIC_01

TGCGTRGGYGK

EGR1, EGR2, EGR3, EGR4

7

EGR3

hsa-miR-9-1

V$MZF1_02

KNNNKAGGGGNAA

MZF1

8

EGR3

hsa-miR-9-1

V$OCT_C

CTNATTTGCATAY

POU2F1; POU2F2

9

EGR3

hsa-miR-9-3

V$CREBP1_Q2

VGTGACGTMACN

CREB1, ATF2

10

GAD1

hsa-miR-9-2

V$OLF1_01

CDABTCCCYAGRGARBNKG

EBF1

11

GAD1

hsa-miR-9-3

V$NRSF_01

TTCAGCACCACGGACAGMGCC

REST

12

GRIN1

hsa-miR-195

V$EGR1_01, V$NGFIC_01

TGCGTRGGYGK

EGR1, EGR2, EGR3, EGR4

13

GRM7

hsa-miR-195

V$AHRARNT_01

KNNKNNTYGCGTGCMS

AHR, ARNT

14

GRM7

hsa-miR-195

V$NGFIC_01

TGCGTRGGYGK

EGR1, EGR2, EGR3, EGR4

15

GRM7

hsa-miR-20b

V$NGFIC_01

TGCGTRGGYGK

EGR1, EGR2, EGR3, EGR4

16

GRM7

hsa-miR-20b

V$TAL1BETAE47_01

AACAGATGKT

TCF3, TAL1

17

GRM7

hsa-miR-92a-2

V$NGFIC_01

TGCGTRGGYGK

EGR1, EGR2, EGR3, EGR4

18

GRM7

hsa-miR-92a-2

V$TAL1BETAE47_01

AACAGATGKT

TCF3, TAL1

19

HTR4

hsa-miR-195

V$AHRARNT_01

KNNKNNTYGCGTGCMS

AHR, ARNT

20

HTR4

hsa-miR-195

V$GCNF_01

TCAAGKTCAAGKTCA

NR6A1

21

MTHFR

hsa-miR-24-2

V$AHRARNT_02

KNNKNNTYGCGTGCMS

AHR, ARNT

22

NEUROG1

hsa-miR-20b

V$POU6F1_01

GCATAAWTTAT

POU6F1

23

NR4A2

hsa-miR-20b

V$PAX4_03

YCACCCB

PAX4

24

NR4A2

hsa-miR-212

V$BACH2_01

SRTGAGTCANC

BACH2

25

NR4A2

hsa-miR-212

V$CEBP_C

GWVTKNKGYAAKNSAYA

CEBPA

26

NR4A2

hsa-miR-212

V$CREB_01, V$CREBP1CJUN_01, V$CREBP1_Q2

TGACGTMA

CREB1, ATF2

27

NR4A2

hsa-miR-212

V$FREAC3_01

GTAAATAAACA

FOXC1

28

NTNG1

hsa-miR-9-3

V$PAX5_02

RRMSWGANWYCTNRAGCGKRACSRYNSM

PAX5

29

PDLIM5

hsa-miR-195

V$AHRARNT_01

KNNKNNTYGCGTGCMS

AHR, ARNT

30

RTN4

hsa-miR-212

V$BACH1_01, V$BACH2_01

SRTGAGTCA

BACH1, BACH2

31

TSNAX

hsa-miR-9-1

V$OCT_C

CTNATTTGCATAY

POU2F1, POU2F2

32

YWHAH

hsa-miR-195

V$EGR1_01

TGCGTRGGYGK

EGR1, EGR2, EGR3, EGR4


Guo et al. BMC Systems Biology 2010 4:10   doi:10.1186/1752-0509-4-10

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