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Open Access Highly Accessed Research article

A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule"

Damion Nero1, Gabriel Krouk1, Daniel Tranchina12 and Gloria M Coruzzi1*

Author Affiliations

1 Center for Genomics and Systems Biology, Department of Biology, New York University, 100 Washington Square East, 1009 Main Building, New York, 10003, USA

2 Courant Institute of Mathematical Sciences, New York, 251 Mercer St, New York, NY, 10012, USA

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BMC Systems Biology 2009, 3:59  doi:10.1186/1752-0509-3-59

Published: 6 June 2009

Additional files

Additional file 1:

Additional Tables and Legends. Contains all Additional Table and legend cited above including: 1) Summary Table of C/N Datasets Used to Generate N-biclusters; 2) BioMaps Analysis of N-biclusters; 3) N-bicluster 9 gene list; 4) Results of N/H Biclustering; 5) Significant H-biclusters Over-represented Functional Categories; 6) Hormone Microarray Datasets.

Format: PDF Size: 145KB Download file

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Additional file 2:

ANOVA [R] script and results. Contains the entire commented procedure of the ANOVA analysis, comparing N/H controlled genes vs. N-exclusive genes.

Format: PDF Size: 49KB Download file

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Open Data