Table 1

Missing enzymes from the C. reinhardtii database

Rxn #

E.C. #

Gene Description

Reaction


5

2.7.1.11

Phosphofructokinase

F6P + ATP --> F16P + ADP


6

3.1.3.11

Fructose-1,6-Phosphatase

F16P + H2O --> F6P + Pi


7

2.7.1.11

Phosphofructosekinase

F6P_c + ATP_c --> F16P_c + ADP_c


167

3.6.1.3

ATPase

ATP_c + H2O_c --> ADP_c + Pi_c


169

3.6.1.3

ATPase

ATP_m+ H2O_m --> ADP_m + Pi_m


209

2.7.1.31

Glycerate Kinase

Glycerate_c + ATP_c → 3PG_c + ADP_c


300

4.1.2.15

DAP synthase, KDPH Synthetase

PEP_c + E4P_c + H2O_c --> DDP_c


326

3.6.1.-

Dihydroneopterin Dephosphorylase

DHN + 2 H2O --> DHDN + PP + Pi


328

2.7.6.3

Dihydropterin Pyrophosphokinase

HMD + ATP --> DHT + AMP


330

4.1.3.38

Aminodeoxychorismate Lyase

4AD --> PYR + ABZ


336

2.7.1.28

Triose Kinase

Glyceraldehyde + ATP --> GAP + ADP


353

2.3.1.31

Homoserine O-acetyltransferase

Hser + AcCoA --> OAH + CoA


357

2.3.1.46

Homoserine O-Succinyltransferase

SucCoA_c + Hser_c --> CoA_c + OSH_c


377

4.1.1.48

Indole-3-glycerol Phosphate Synthase

CPDRP_c --> I3GP_c + H2O_c + CO2_c


380

3.1.3.15

Histidinol Phosphatase

HOLP_c + H2O_c --> HOL_c + Pi_c


446

2.7.4.14

Cytidylate kinase.

CMP_c + ATP_c --> CDP_c + ADP_c


484

6.3.4.3

Formate-tetrahydrofolate ligase

ATP_c + Formate_c + THF_c --> ADP_c + Pi_c + FTHF_c


Missing enzymes from the Chamydomonas reinhardtii database but assumed present to make a complete metabolic network. Metabolites without subscripts are localized in the cytosol, those denoted by a small 'm' and 'c' are localized to the mitochondria and chloroplast.

Boyle and Morgan BMC Systems Biology 2009 3:4   doi:10.1186/1752-0509-3-4

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