Table 1 |
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|
Properties of metabolic reconstruction of P. putida KT2440 |
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|
Reconstruction & Organism
|
iJN746 P. putida |
iAF1260 E. coli |
iYO844 B. subtilis |
iNJ661 M. tuberculosis |
iMO1056 P. aeruginosa |
|
|
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|
Protein coding genes per genome |
5,350a |
4,464b |
4,106a |
3,989a |
5669 |
|
SKI valuec |
0.74 |
55.87 |
4.97 |
7.84 |
5.12 |
|
Genes (% of genome) |
746 (14%) |
1260 (28%) |
844 (21%) |
661 (17%) |
1056 (18,6%) |
|
Reactions |
950 |
2077 |
1020 |
939 |
883 |
|
Gene-reaction associated |
810 |
1919 |
904 |
723 |
839 |
|
Non-gene- associated network reaction (% of network reactions) |
140 (17%) |
158 (8%) |
116 (13%) |
116 (16%) |
44 (5%) |
|
Exchange reactions |
90 |
304 |
225 |
88 |
- |
|
Metabolites |
911 |
1039 |
988 |
828 |
- |
|
|
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|
Properties of metabolic reconstruction of P. putida KT2440 were compared with recently published metabolic reconstructions of E. coli MG1655 (iAF1260 [36]), B. subtilis (iYO844 [37]), and M. tuberculosis H37Rv (iNJ661 [39]) and P. aeruginosa (iMO1056 [64]). a taken from KEGG [57]; b based on Riley et al. [98]; c Species Knowledge Index (SKI) was calculated as described in [65]. |
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|
Nogales et al. BMC Systems Biology 2008 2:79 doi:10.1186/1752-0509-2-79 |
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