Table 1

Properties of metabolic reconstruction of P. putida KT2440

Reconstruction & Organism

iJN746

P. putida

iAF1260

E. coli

iYO844

B. subtilis

iNJ661

M. tuberculosis

iMO1056

P. aeruginosa


Protein coding genes per genome

5,350a

4,464b

4,106a

3,989a

5669

SKI valuec

0.74

55.87

4.97

7.84

5.12

Genes (% of genome)

746 (14%)

1260 (28%)

844 (21%)

661 (17%)

1056 (18,6%)

Reactions

950

2077

1020

939

883

Gene-reaction associated

810

1919

904

723

839

Non-gene- associated network reaction (% of network reactions)

140 (17%)

158 (8%)

116 (13%)

116 (16%)

44 (5%)

Exchange reactions

90

304

225

88

-

Metabolites

911

1039

988

828

-


Properties of metabolic reconstruction of P. putida KT2440 were compared with recently published metabolic reconstructions of E. coli MG1655 (iAF1260 [36]), B. subtilis (iYO844 [37]), and M. tuberculosis H37Rv (iNJ661 [39]) and P. aeruginosa (iMO1056 [64]). a taken from KEGG [57]; b based on Riley et al. [98]; c Species Knowledge Index (SKI) was calculated as described in [65].

Nogales et al. BMC Systems Biology 2008 2:79   doi:10.1186/1752-0509-2-79

Open Data