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Open Access Highly Accessed Research article

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

David J Weston1*, Lee E Gunter1, Alistair Rogers23 and Stan D Wullschleger1

Author Affiliations

1 Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6422, USA

2 Environmental Sciences Department, Brookhaven National Laboratory, Upton, NY 11973-5000, USA

3 Department of Crop Sciences, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA

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BMC Systems Biology 2008, 2:16  doi:10.1186/1752-0509-2-16

Published: 4 February 2008

Additional files

Additional file 1:

Supplementary Table 1; Gene network coexpression gene input list.

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Additional file 2:

Supplementary Table 2; Module gene enrichment of differentially expressed genes.

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Additional file 3:

Supplementary Table 3; Results for the weighted gene coexpression network analysis.

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Additional file 4:

Supplementary Table 4; Signature intersect gene annotation and network properties.

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Additional file 5:

Supplementary Figure 1; Similarity score comparison of individual replicates of the combined heat and drought treatment.

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Additional file 6:

Supplementary Figure 2; Microarray hybridization design schematic.

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Additional file 7:

R scripts used to construct the weighted gene coexpression network.

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Additional file 8:

The reference genomic signatures lists.

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