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Open Access Highly Accessed Research article

Understanding network concepts in modules

Jun Dong and Steve Horvath*

BMC Systems Biology 2007, 1:24  doi:10.1186/1752-0509-1-24

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BioMed Central: 14 citations

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Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition

Marcin Cieślik, Stephen A Hoang, Natalya Baranova, Sanjay Chodaparambil, Manish Kumar, David F Allison, Xiaojiang Xu, J Jacob Wamsley, Lisa Gray, David R Jones, Marty W Mayo, Stefan Bekiranov Epigenetics & Chromatin 2013, 6:28 (2 September 2013)

Methodology article   Open Access Highly Accessed

An inferential framework for biological network hypothesis tests

Phillip D Yates, Nitai D Mukhopadhyay BMC Bioinformatics 2013, 14:94 (14 March 2013)

Methodology article   Open Access Highly Accessed

Cluster and propensity based approximation of a network

John Michael Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath BMC Systems Biology 2013, 7:21 (14 March 2013)

Research article   Open Access Highly Accessed

Comparison of co-expression measures: mutual information, correlation, and model based indices

Lin Song, Peter Langfelder, Steve Horvath BMC Bioinformatics 2012, 13:328 (9 December 2012)

Methodology article   Open Access Highly Accessed

Network methods for describing sample relationships in genomic datasets: application to Huntington’s disease

Michael C Oldham, Peter Langfelder, Steve Horvath BMC Systems Biology 2012, 6:63 (12 June 2012)

Research   Open Access

A comparative study of cancer proteins in the human protein-protein interaction network

Jingchun Sun, Zhongming Zhao BMC Genomics 2010, 11(Suppl 3):S5 (1 December 2010)

Research article   Open Access Highly Accessed

Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

Christiaan GJ Saris, Steve Horvath, Paul WJ van Vught, Michael A van Es, Hylke M Blauw, Tova F Fuller, Peter Langfelder, Joseph DeYoung, John HJ Wokke, Jan H Veldink, Leonard H van den Berg, Roel A Ophoff BMC Genomics 2009, 10:405 (27 August 2009)

Short Report   Open Access

Network module detection: Affinity search technique with the multi-node topological overlap measure

Ai Li, Steve Horvath BMC Research Notes 2009, 2:142 (20 July 2009)

Research article   Open Access Highly Accessed

Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

Mike J Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath BMC Genomics 2009, 10:327 (20 July 2009)

Software   Open Access Highly Accessed

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder, Steve Horvath BMC Bioinformatics 2008, 9:559 (29 December 2008)

Research article   Open Access Highly Accessed

A cross-species transcriptomics approach to identify genes involved in leaf development

Nathaniel Street, Andreas Sjödin, Max Bylesjö, Petter Gustafsson, Johan Trygg, Stefan Jansson BMC Genomics 2008, 9:589 (5 December 2008)

Methodology article   Open Access Highly Accessed

Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome

Angela P Presson, Eric M Sobel, Jeanette C Papp, Charlyn J Suarez, Toni Whistler, Mangalathu S Rajeevan, Suzanne D Vernon, Steve Horvath BMC Systems Biology 2008, 2:95 (6 November 2008)

Research article   Open Access Highly Accessed

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

David J Weston, Lee E Gunter, Alistair Rogers, Stan D Wullschleger BMC Systems Biology 2008, 2:16 (4 February 2008)

Methodology article   Open Access Highly Accessed

Eigengene networks for studying the relationships between co-expression modules

Peter Langfelder, Steve Horvath BMC Systems Biology 2007, 1:54 (21 November 2007)