Table 4

Tissue compartmentalization of SRLV sequences. SRLV sequence compartmentalization between tissues within the animal (n = 7)*, using Bayesian MCMC approach for determination of Association Index (AI), Parsimony Score (PS) and Monophyletic Clade (MC) values

Animal No.

Statistic

No. of sequences

Mean

95% Confidence interval (CI)

Significance


166

AI

90

2.262

1.433-3.125

p < 0.00001

PS

90

24.845

22-27

p < 0.00001

MC (BAL)

27

9.815

5-11

p < 0.01

MC (L)

12

3.260

2-4

p < 0.01

MC (SC)

21

3.541

2-6

p < 0.05

MC (PBMC)

20

3.411

3-5

p < 0.05

MC (CPx)

10

1.773

1-3

p < 0.05

223

AI

32

0.381

0.209-0.602

p < 0.00001

PS

32

7.896

7-9

p < 0.00001

MC (CPx)

13

7.986

8-8

p < 0.01

MC (L)

4

2.925

2-3

p < 0.01

MC (MG)

6

2.035

2-2

p < 0.05

MC (PBMC)

5

4.029

4-4

p < 0.01

MC (SC)

4

1.151

1-2

Non significant

333

AI

74

1.034

0.552-1.547

p < 0.00001

PS

74

15.723

14-17

p < 0.00001

MC (BAL)

14

6.583

3-12

p < 0.01

MC (CPx)

16

3.089

2-5

p < 0.05

MC (L)

8

4.778

3-5

p < 0.01

MC (MG)

6

3.977

4 -4

p < 0.01

MC (PBMC)

17

4.141

3-7

p < 0.01

MC (SC)

13

4.175

4-5

p < 0.01

336

AI

64

0.002

1.160 × 10-9 - 1.953 × 10-4

p < 0.00001

PS

64

4.204

4-5

p < 0.00001

MC (BAL)

14

8.348

5-10

p < 0.01

MC (L)

12

11.983

12 -12

p < 0.01

MC (MG)

25

23.300

16-25

p < 0.01

MC (SC)

13

10.967

11 -11

p < 0.01

368

AI

43

0.725

0.333-1.115

p < 0.00001

PS

43

7.961

7-9

p < 0.00001

MC (BAL)

14

3.872

2-7

p < 0.01

MC (CPX)

15

8.632

5-11

p < 0.01

MC (L)

3

1.013

1 -1

Non significant

MC (MG)

1

1.000

1 -1

Non significant

MC (SC)

10

8.655

6-10

p < 0.01

697

AI

15

0.000

0-1.878 × 10-5

p < 0.00001

PS

15

1.000

1 -1

p < 0.00001

MC (SC)

12

12.000

12 -12

p < 0.01

698

AI

28

0.446

0.014-0.839

p < 0.00001

PS

28

5.514

4-7

p < 0.00001

MC (MG)

16

4.227

2-7

p < 0.05

MC (PBMC)

4

1.416

1-2

Non significant

MC (SC)

8

6.264

6-7

p < 0.01


* The animal 292 was not included because less than 10 sequences were available

Ramírez et al. BMC Veterinary Research 2012 8:8   doi:10.1186/1746-6148-8-8

Open Data