Table 2

Tissue effect on expression

Gene

Effect of tissue on expression*

p-values** (SEM)


SCD

H > 1.28 > A

0.0757** (.1373)

H > 1.32 > P

0.0449** (.1373)

TMEM47

A > 1.43 > F

0.0003 (.0956)

A > 1.78 > P

< 0.0001 (.0956)

F > 1.25 > P

0.0244** (.0956)

H > 1.49 > F

0.0001 (.0982)

H > 1.85 > P

< 0.0001 (.0982)

ATP5A1

F > 1.49 > A

0.0025 (.1278)

F > 1.48 > H

0.0038 (.1314)

P > 1.33 > A

0.0303** (.1278)

P > 1.32 > H

0.0406** (.1314)

CALM2

A > 1.96 > H

< 0.0001 (.0874)

F > 2.18 > H

< 0.0001 (.0874)

P > 1.92 > H

< 0.0001 (.0874)

UBE2V2

F > 1.22 > H

0.0670** (.1072)

LOC488837

A > 1.43 > F

0.0006 (.0997)

A > 2.16 > H

< 0.0001 (.1025)

A > 1.60 > P

< 0.0001 (.0997)

F > 1.51 > H

0.0001 (.1025)

P > 1.32 > H

0.0043 (.1025)

RIMBP2

A > 2.08 > H

< 0.0001 (.1061)

F > 1.98 > H

< 0.0001 (.1061)

P > 1.75 > H

< 0.0001 (.1061)

GLT1

F > 2.34 > H

< 0.0001 (.0974)

P > 2.06 > H

< 0.0001 (.0974)

A > 2.37 > H

< 0.0001 (.0974)


* Fold effect of tissue on expression, A = amygdala, F = frontal cortex, H = hypothalamus, and P = parietal cortex, highest > relative expression > lowest.

** Not significant when applying Bonferroni correction (α = 0.05, n = 9 gives 0.05/9~0,006)

Våge et al. BMC Veterinary Research 2010 6:34   doi:10.1186/1746-6148-6-34

Open Data