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Open Access Highly Accessed Research article

Simulation of an SEIR infectious disease model on the dynamic contact network of conference attendees

Juliette Stehlé1*, Nicolas Voirin23, Alain Barrat14, Ciro Cattuto4, Vittoria Colizza567, Lorenzo Isella4, Corinne Régis3, Jean-François Pinton8, Nagham Khanafer23, Wouter Van den Broeck4 and Philippe Vanhems23

Author Affiliations

1 Centre de Physique Théorique de Marseille, CNRS UMR 6207, Marseille, France

2 Hospices Civils de Lyon, Hôpital Edouard Herriot, Service d'Hygiène, Epidémiologie et Prévention, Lyon, France

3 Université de Lyon; université Lyon 1; CNRS UMR 5558, laboratoire de Biométrie et de Biologie Evolutive, Equipe Epidémiologie et Santé Publique, Lyon, France

4 Data Science Laboratory, Institute for Scientific Interchange (ISI) Foundation, Torino, Italy

5 INSERM, U707, Paris F-75012, France

6 UPMC Université Paris 06, Faculté de Médecine Pierre et Marie Curie, UMR S 707, Paris F75012, France

7 Computational Epidemiology Laboratory, Institute for Scientific Interchange (ISI) Foundation, Torino, Italy

8 Laboratoire de Physique de l'Ecole Normale Supérieure de Lyon, CNRS UMR 5672, Lyon, France

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BMC Medicine 2011, 9:87  doi:10.1186/1741-7015-9-87

Published: 19 July 2011

Abstract

Background

The spread of infectious diseases crucially depends on the pattern of contacts between individuals. Knowledge of these patterns is thus essential to inform models and computational efforts. However, there are few empirical studies available that provide estimates of the number and duration of contacts between social groups. Moreover, their space and time resolutions are limited, so that data are not explicit at the person-to-person level, and the dynamic nature of the contacts is disregarded. In this study, we aimed to assess the role of data-driven dynamic contact patterns between individuals, and in particular of their temporal aspects, in shaping the spread of a simulated epidemic in the population.

Methods

We considered high-resolution data about face-to-face interactions between the attendees at a conference, obtained from the deployment of an infrastructure based on radiofrequency identification (RFID) devices that assessed mutual face-to-face proximity. The spread of epidemics along these interactions was simulated using an SEIR (Susceptible, Exposed, Infectious, Recovered) model, using both the dynamic network of contacts defined by the collected data, and two aggregated versions of such networks, to assess the role of the data temporal aspects.

Results

We show that, on the timescales considered, an aggregated network taking into account the daily duration of contacts is a good approximation to the full resolution network, whereas a homogeneous representation that retains only the topology of the contact network fails to reproduce the size of the epidemic.

Conclusions

These results have important implications for understanding the level of detail needed to correctly inform computational models for the study and management of real epidemics.

Please see related article BMC Medicine, 2011, 9:88