Table 9

SNPs with anomalous cluster plots.

Filter

SNP

Disease(s)

Cluster plot feature


Stringent, relaxed

rs10502407

CAD, T2D, BD

58C disparity

Stringent

rs11010908

T2D

58C disparity

Stringent

rs12070036

BD

58C disparity

Stringent

rs12381130

T1D

58C disparity

Stringent

rs295470

CAD

58C disparity

Stringent, relaxed

SNP_A-1797773

T2D, BD, CD

58C disparity

Stringent (MHC in T1D)

rs9257223

T1D

58C disparity

Relaxed

rs11028186

RA

58C disparity

Relaxed

rs12256867

T2D

58C disparity

Relaxed

rs1404223

CAD

58C disparity

Relaxed

rs17230081

T2D

58C disparity

Relaxed

rs1842055

CAD

58C disparity

Relaxed

rs330201

CAD

58C disparity

Relaxed, no-call

rs4318932

T2D

NBS/CAD/RA disparity

Relaxed

rs4473816

RA

58C disparity

Relaxed

rs7259082

CAD

58C disparity

Relaxed

rs9665670

BD, CAD

58C disparity

Relaxed, no-call

SNP_A-1817967

CD

58C disparity

No-call

rs10238378

BD

58C disparity

No-call

rs10485575

BD

58C disparity

No-call

rs10811497

BD

58C disparity

No-call

rs12428824

BD

58C disparity

No-call

rs1421867

T1D

more than 3 clusters

No-call

rs1819829

HT

NBS/CAD/RA disparity

No-call

rs2039945

T2D

58C disparity

No-call

rs2804672

HT

NBS/CAD/RA disparity

No-call

rs6512631

CAD

58C disparity


Ross BMC Medicine 2011 9:12   doi:10.1186/1741-7015-9-12

Open Data