Table 10

Linkage between stringent-filter SNPs and adjacent SNPs.

Stringent test SNP

Disease

Adjacent SNP

P

Comments


rs9551988

HT

rs3858741

3.2 × 10-12

1.1 kb away, within same duplicon

BD

rs3858741

8.9 × 10-8

(No linkage for CAD.)

rs9378249

BD

rs2596477

3.7 × 10-7

22 bp away, within same duplicon

HT

rs2596477

6.0 × 10-4

rs841245

HT

rs12229182

2.5 × 10-6

12 kb away, within same duplicon

rs841636

1.7 × 10-5

12 kb away, within same duplicon

(No linkage at intervening SNP rs10842853)

SNP_A-1948953

BD

rs9893203

5.4 × 10-4

8.6 kb away

HT

rs9893203

6.8 × 10-4

rs11010908

T2D

rs17561365

1.2 × 10-3

3.2 kb away, within same duplicon


The P value corresponds to a one-sided chi-squared test for an increased no-call rate. P values for excluded SNPs were all above 2 × 10-3.

Ross BMC Medicine 2011 9:12   doi:10.1186/1741-7015-9-12

Open Data