Additional file 11: Table S4.

Autoimmune disease-associated single nucleotide polymorphisms located within VDR ChIP-seq peaks. RegulomeDB score: 1a eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak; 1b eQTL + TF binding + any motif + DNase Footprint + DNase peak; 1c eQTL + TF binding + matched TF motif + DNase peak; 1d eQTL + TF binding + any motif + DNase peak; 1e eQTL + TF binding + matched TF motif; 1f eQTL + TF binding/DNase peak; 2a TF binding + matched TF motif + matched DNase Footprint + DNase peak; 2b TF binding + any motif + DNase Footprint + DNase peak; 2c TF binding + matched TF motif + DNase peak; 3a TF binding + any motif + DNase peak; 3b TF binding + matched TF motif; 4 TF binding + DNase peak; 5 TF binding or DNase peak; 6 other; 7 no functional annotation.25(OH)D≥75 = samples with 25-hydroxyvitamin D ≥75 nM, 25(OH)D<75 = samples with 25-hydroxyvitamin D <75 nM, TF = transcription factor.

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Handel et al. BMC Medicine 2013 11:163   doi:10.1186/1741-7015-11-163